SRR3932805

SRA first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

91/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Whole genome sequencing of Bothriurus keyserlingi on a NextSeq 500, generating 1.2 million short reads with moderate quality (88% Q30 bases) across 374 million bases. The modest N-content (0.051%) and 35.2% GC composition are typical for arachnid WGS; suitable for assembly with standard filtering approaches.

Data type / assay

WGS

Organism

Bothriurus keyserlingi

Instrument

NextSeq 500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 373911334 reported

total reads 1238117 reported

n content pct 0.051 measured

pct q20 bases 92.1 measured

pct q30 bases 88 measured

gc content pct 35.2 measured

mean read length 151 measured

mean base quality 33.3 measured

adapter content pct 2.88 measured

duplication rate pct 8.94 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 91/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 88 measured ×1 90%

duplication rate pct 8.94 measured ×0.5 97%

adapter content pct 2.88 measured ×0.4 87%

QC cost 28 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0