SRR3932811

SRA first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

43/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Whole genome sequencing of Atypoides riversi on a NextSeq 500, yielding 1.2 million short reads with moderate quality (81.5% Q30 bases) across 375 million bases. The elevated N-content (0.116%) is typical for arachnid sequencing; appropriate for assembly projects with aggressive quality filtering.

Data type / assay

WGS

Organism

Atypoides riversi

Instrument

NextSeq 500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 374677206 reported

total reads 1240653 reported

n content pct 0.116 measured

pct q20 bases 87.5 measured

pct q30 bases 81.5 measured

gc content pct 36.8 measured

mean read length 151 measured

mean base quality 32 measured

adapter content pct 6.61 measured

duplication rate pct 43.18 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 43/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 81.5 measured ×1 57%

duplication rate pct 43.18 measured ×0.5 0%

adapter content pct 6.61 measured ×0.4 60%

QC cost 33 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0