Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
← Dataset search

SRR3944139

SRA first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

95/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Illumina HiSeq 2000 whole-genome sequencing (WGS) of Citrus medica (citron) with 38.2 million reads, 9.6 Gb bases, and 93.1% Q20 (88% Q30) provides moderate-quality genome data for this ancestral citrus species, enabling trait-associated marker discovery. The 37.4% GC and substantial read depth support SNP calling and identification of Citrus medica-specific genomic features relevant to citrus breeding and evolution.

Data type / assay
WGS
Organism
Citrus medica
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 9559469750 reported
total reads 38237879 reported
n content pct 0 measured
pct q20 bases 93.1 measured
pct q30 bases 88 measured
gc content pct 37.4 measured
mean read length 125 measured
mean base quality 35 measured
adapter content pct 0.01 measured
duplication rate pct 2.08 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 95/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 88 measured ×1 90%
duplication rate pct 2.08 measured ×0.5 100%
adapter content pct 0.01 measured ×0.4 100%
QC cost 41 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0