SRR4002892

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

88/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Bulk RNA-seq from the honey bee Apis mellifera on an Illumina HiSeq 2000, producing 12.4 million short reads with strong Q30 coverage (95.8%) across 2.2 billion bases. The moderate GC composition (40.2%) and minimal contamination support gene expression analysis in this key pollinator insect.

Data type / assay

bulk-RNA-seq

Organism

Apis mellifera

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 2234476260 reported

total reads 12413757 reported

n content pct 0.002 measured

pct q20 bases 99.2 measured

pct q30 bases 95.8 measured

gc content pct 40.2 measured

mean read length 90 measured

mean base quality 37.2 measured

adapter content pct 0.3 measured

duplication rate pct 63.71 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 88/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.8 measured ×1 100%

mean base quality 37.2 measured ×0.6 100%

adapter content pct 0.3 measured ×0.4 100%

duplication rate pct 63.71 measured ×0.4 25%

QC cost 17 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0