Corpus 1,284 assessed · 1,185 scored · 647 reproduced ≥75 · 173 flagged ·∅ 73.9/100
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SRR4017753

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

HiSeq 2000 short-read RNA-seq of Apis mellifera (honeybee) with 21.2 million reads and 91.9% Q30 provides good-quality transcriptomics for this model social insect, enabling behavior, reproduction, and immune-gene profiling across castes. The 42.2% GC and substantial read depth enable comparative expression analysis of genes regulating foraging, reproduction, and colony-level organization.

Data type / assay
bulk-RNA-seq
Organism
Apis mellifera
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 4243784600 reported
total reads 21218923 reported
n content pct 0.001 measured
pct q20 bases 96.2 measured
pct q30 bases 91.9 measured
gc content pct 42.2 measured
mean read length 100 measured
mean base quality 35.7 measured
adapter content pct 1.61 measured
duplication rate pct 26.47 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 91.9 measured ×1 100%
mean base quality 35.7 measured ×0.6 100%
adapter content pct 1.61 measured ×0.4 100%
duplication rate pct 26.47 measured ×0.4 100%
QC cost 34 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0