Corpus 1,284 assessed · 1,185 scored · 647 reproduced ≥75 · 173 flagged ·∅ 73.9/100
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SRR4017759

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

96/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

HiSeq 2000 short-read RNA-seq of Apis mellifera (honeybee) with 25.4 million reads and 92.8% Q30 provides good-quality transcriptomics data for this model social insect, enabling behavior and physiology gene profiling across castes and conditions. The 42.9% GC and substantial read depth support sensitive detection of genes regulating social behavior, reproduction, and immune response in honey-bee colonies.

Data type / assay
bulk-RNA-seq
Organism
Apis mellifera
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 5078201200 reported
total reads 25391006 reported
n content pct 0.001 measured
pct q20 bases 96.3 measured
pct q30 bases 92.8 measured
gc content pct 42.9 measured
mean read length 100 measured
mean base quality 36 measured
adapter content pct 3.08 measured
duplication rate pct 39.05 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 96/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 92.8 measured ×1 100%
mean base quality 36 measured ×0.6 100%
adapter content pct 3.08 measured ×0.4 94%
duplication rate pct 39.05 measured ×0.4 80%
QC cost 7 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0