Corpus 1,284 assessed · 1,185 scored · 647 reproduced ≥75 · 173 flagged ·∅ 73.9/100
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SRR4017783

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

90/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

HiSeq 2000 short-read RNA-seq of Apis mellifera (honeybee) with 15.3 million reads and 88.7% Q30 provides moderate-quality transcriptomics data for this social-insect model, suitable for expression profiling and differential-analysis studies. The 45.6% GC and moderate depth enable identification of caste-regulated and condition-dependent genes relevant to understanding honeybee colony biology and reproduction.

Data type / assay
bulk-RNA-seq
Organism
Apis mellifera
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 3062013000 reported
total reads 15310065 reported
n content pct 0.001 measured
pct q20 bases 93.1 measured
pct q30 bases 88.7 measured
gc content pct 45.6 measured
mean read length 100 measured
mean base quality 34.5 measured
adapter content pct 10.2 measured
duplication rate pct 27.33 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 90/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 88.7 measured ×1 94%
mean base quality 34.5 measured ×0.6 100%
adapter content pct 10.2 measured ×0.4 54%
duplication rate pct 27.33 measured ×0.4 100%
QC cost 34 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0