SRR4023192

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

57/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Bulk RNA-seq from Drosophila pseudoobscura on an Illumina HiSeq 2000, producing 39.2 million short reads across 7.9 billion bases with lower Q30 coverage (77%). The minimal N-content (0.002%) and moderate GC composition (45.8%) provide substantial depth that may support analyses with aggressive quality filtering.

Data type / assay

bulk-RNA-seq

Organism

Drosophila pseudoobscura

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 7911713800 reported

total reads 39166900 reported

n content pct 0.002 measured

pct q20 bases 80.8 measured

pct q30 bases 77 measured

gc content pct 45.8 measured

mean read length 101 measured

mean base quality 30.2 measured

adapter content pct 0.27 measured

duplication rate pct 30.42 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 57/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 77 measured ×1 35%

mean base quality 30.2 measured ×0.6 37%

adapter content pct 0.27 measured ×0.4 100%

duplication rate pct 30.42 measured ×0.4 99%

QC cost 45 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0