Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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SRR4025941

ENA first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

88/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Illumina MiSeq whole-genome sequencing (WGS) of Salmonella enterica with 1.36 million reads, 597 Mb bases, and 90.3% Q20 (85.5% Q30) provides low-coverage bacterial genome data suitable for strain identification and phylogenetic placement. The 52.8% GC and modest depth enable draft-level assembly scaffolding and virulence-gene detection more than complete genome closure or fine-scale variant discovery in this pathogenic bacterium.

Data type / assay
WGS
Organism
Salmonella enterica
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 597169721 reported
total reads 1357548 reported
n content pct 0.006 measured
pct q20 bases 90.3 measured
pct q30 bases 85.5 measured
gc content pct 52.8 measured
mean read length 216.2 measured
mean base quality 34.1 measured
adapter content pct 0 measured
duplication rate pct 5.79 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 88/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 85.5 measured ×1 78%
duplication rate pct 5.79 measured ×0.5 100%
adapter content pct 0 measured ×0.4 100%
QC cost 10 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0