Corpus 1,284 assessed · 1,185 scored · 647 reproduced ≥75 · 173 flagged ·∅ 73.9/100
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SRR4051855

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

39/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

High-depth bulk RNA-seq from Apis mellifera on an Illumina HiSeq 2500, producing 281 million short reads across 56.8 billion bases, though with lower Q30 coverage (60.3%). This exceptionally deep dataset, despite quality concerns at the read level, enables profiling of even low-abundance transcripts when aggregated appropriately.

Data type / assay
bulk-RNA-seq
Organism
Apis mellifera
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 56756823945 reported
total reads 281001187 reported
n content pct 0.007 measured
pct q20 bases 90 measured
pct q30 bases 60.3 measured
gc content pct 39.4 measured
mean read length 101 measured
mean base quality 29.3 measured
adapter content pct 0 measured
duplication rate pct 24.71 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 39/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 60.3 measured ×1 0%
mean base quality 29.3 measured ×0.6 22%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 24.71 measured ×0.4 100%
QC cost 32 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0