SRR4069278

ENA first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

89/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Short-read bulk RNA-seq from Hadrurus spadix on an Illumina HiSeq 2000 with 24.2 million reads spanning 7.3 billion bases and strong Q30 coverage (93.9%). The minimal N-content (0.01%) and lower GC composition (37.7%) enable expression profiling in this scorpion arachnid.

Data type / assay

bulk-RNA-seq

Organism

Hadrurus spadix

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 7272963300 reported

total reads 24243211 reported

n content pct 0.01 measured

pct q20 bases 96 measured

pct q30 bases 93.9 measured

gc content pct 37.7 measured

mean read length 150 measured

mean base quality 37.7 measured

adapter content pct 13.74 measured

duplication rate pct 21.99 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 89/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 93.9 measured ×1 100%

mean base quality 37.7 measured ×0.6 100%

adapter content pct 13.74 measured ×0.4 35%

duplication rate pct 21.99 measured ×0.4 100%

QC cost 35 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0