SRR4084099

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

90/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Short-read bulk RNA-seq from Apis mellifera on an Illumina HiSeq 2500, yielding 23.6 million reads with excellent Q30 coverage (96.9%) across 5.9 billion bases. The minimal contamination (0.001% N-content) and moderate GC composition (40.9%) support high-confidence expression profiling in honeybees.

Data type / assay

bulk-RNA-seq

Organism

Apis mellifera

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 5904396500 reported

total reads 23617586 reported

n content pct 0.001 measured

pct q20 bases 98.8 measured

pct q30 bases 96.9 measured

gc content pct 40.9 measured

mean read length 125 measured

mean base quality 40.5 measured

adapter content pct 0.65 measured

duplication rate pct 57.56 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 90/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.9 measured ×1 100%

mean base quality 40.5 measured ×0.6 100%

adapter content pct 0.65 measured ×0.4 100%

duplication rate pct 57.56 measured ×0.4 39%

QC cost 37 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0