SRR4252612

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

70/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

miRNA-seq from Blattella germanica on a NextSeq 500, generating 9.2 million short reads with strong Q30 coverage (95.8%) across 920 million bases. The minimal N-content (0.001%) and elevated GC composition (49.8%) enable robust microRNA quantification in cockroaches.

Data type / assay

bulk-RNA-seq

Organism

Blattella germanica

Instrument

NextSeq 500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 919683700 reported

total reads 9196837 reported

n content pct 0.001 measured

pct q20 bases 97 measured

pct q30 bases 95.8 measured

gc content pct 49.8 measured

mean read length 50 measured

mean base quality 34.6 measured

adapter content pct 68.78 measured

duplication rate pct 65.68 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 70/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.8 measured ×1 100%

mean base quality 34.6 measured ×0.6 100%

adapter content pct 68.78 measured ×0.4 0%

duplication rate pct 65.68 measured ×0.4 21%

QC cost 31 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0