SRR4305087

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

32/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

human gut metagenome

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 1115566801 reported

total reads 5701402 reported

n content pct 0.003 measured

pct q20 bases 79.1 measured

pct q30 bases 65.4 measured

gc content pct 52.2 measured

mean read length 94.9 measured

mean base quality 28 measured

adapter content pct 11.07 measured

duplication rate pct 6.58 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 32/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 65.4 measured ×1 0%

duplication rate pct 6.58 measured ×0.5 100%

adapter content pct 11.07 measured ×0.4 28%

QC cost 25 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0