SRR4334672

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

99/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Bulk RNA-seq from Bemisia tabaci on an Illumina HiSeq 4000, yielding 17.2 million short reads with strong Q30 coverage (94.3%) across 5.2 billion bases. The minimal N-content (0.001%) and lower GC composition (39.3%) support high-depth expression profiling in this hemipteran whitefly pest.

Data type / assay

bulk-RNA-seq

Organism

Bemisia tabaci

Instrument

Illumina HiSeq 4000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 5169809700 reported

total reads 17232699 reported

n content pct 0.001 measured

pct q20 bases 97.6 measured

pct q30 bases 94.3 measured

gc content pct 39.3 measured

mean read length 150 measured

mean base quality 39.5 measured

adapter content pct 0.23 measured

duplication rate pct 32.16 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 99/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94.3 measured ×1 100%

mean base quality 39.5 measured ×0.6 100%

adapter content pct 0.23 measured ×0.4 100%

duplication rate pct 32.16 measured ×0.4 95%

QC cost 28 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0