SRR4417632

ENA first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

60/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Amplicon sequencing from Homo sapiens on an Illumina MiSeq, producing 4.4 million short reads with lower quality (78.1% Q30 bases) across 2.7 billion bases. The zero N-content and elevated GC composition (52.6%) are favorable for human amplicon studies, though moderate Q30 coverage requires filtering.

Data type / assay

amplicon

Organism

Homo sapiens

Instrument

Illumina MiSeq

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 2663191200 reported

total reads 4438652 reported

n content pct 0 measured

pct q20 bases 86.4 measured

pct q30 bases 78.1 measured

gc content pct 52.6 measured

mean read length 300 measured

mean base quality 32.6 measured

adapter content pct 0 measured

duplication rate pct 76.15 measured

mean target coverage 43 extrapolated

How this grade was computed

Weighted mean of 2 scored metric(s) → 60/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 78.1 measured ×1 41%

adapter content pct 0 measured ×0.5 100%

QC cost 17 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0