SRR442164

ENA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Bulk RNA-seq of foxtail millet (Setaria italica) on Illumina HiSeq 2000 achieves 3.5 billion bases with perfect Q20/Q30 accuracy from 19.6 million short reads, enabling genome-wide gene expression profiling in this C4 model crop for domestication and stress response studies.

Data type / assay

bulk-RNA-seq

Organism

Setaria italica

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 3532623480 reported

total reads 19625686 reported

n content pct 0.001 measured

pct q20 bases 100 measured

pct q30 bases 100 measured

gc content pct 52.4 measured

mean read length 90 measured

mean base quality 30 measured

adapter content pct 0 measured

duplication rate pct 27.3 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 100 measured ×1 100%

mean base quality 30 measured ×0.6 33%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 27.3 measured ×0.4 100%

QC cost 39 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0