SRR4425259

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

95/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Bombyx mori bulk-RNA-seq with A-grade quality: Q30 at 87.4% and low duplication (29.18%) indicate robust, high-confidence data. The exceptional depth (184M reads, 36.8 Gb) with consistent quality across all metrics makes this excellent for comprehensive expression studies.

Data type / assay

bulk-RNA-seq

Organism

Bombyx mori

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 36821576000 reported

total reads 184107880 reported

n content pct 1.276 measured

pct q20 bases 94.3 measured

pct q30 bases 87.4 measured

gc content pct 43.2 measured

mean read length 100 measured

mean base quality 34.5 measured

adapter content pct 0 measured

duplication rate pct 29.18 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 95/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 87.4 measured ×1 87%

mean base quality 34.5 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 29.18 measured ×0.4 100%

QC cost 44 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0