SRR4426104

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Bemisia tabaci bulk-RNA-seq with perfect A-grade quality matching SRR4426115: Q30 at 94.4%, high mean quality (39.5), and acceptable duplication (30.92%) indicate nearly identical high-quality data from the same run. Suitable for expression profiling and biological replication.

Data type / assay

bulk-RNA-seq

Organism

Bemisia tabaci

Instrument

Illumina HiSeq 4000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 4972488600 reported

total reads 16574962 reported

n content pct 0.001 measured

pct q20 bases 97.7 measured

pct q30 bases 94.4 measured

gc content pct 39.2 measured

mean read length 150 measured

mean base quality 39.5 measured

adapter content pct 0.3 measured

duplication rate pct 30.92 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94.4 measured ×1 100%

mean base quality 39.5 measured ×0.6 100%

adapter content pct 0.3 measured ×0.4 100%

duplication rate pct 30.92 measured ×0.4 98%

QC cost 54 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0