SRR453157

ENA first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Genome Analyzer II RNA-seq from Mus musculus (34.9M reads, 5.3 billion bases, 55.6% GC, 100% ≥Q30) with perfect base quality provides clean, deep mouse transcriptome data. The high-quality dataset enables sensitive detection of isoforms and lowly-expressed genes.

Data type / assay

bulk-RNA-seq

Organism

Mus musculus

Instrument

Illumina Genome Analyzer II

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 5313654456 reported

total reads 34958253 reported

n content pct 0.226 measured

pct q20 bases 100 measured

pct q30 bases 100 measured

gc content pct 55.6 measured

mean read length 76 measured

mean base quality 30 measured

adapter content pct 0.03 measured

duplication rate pct 22.74 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 100 measured ×1 100%

mean base quality 30 measured ×0.6 33%

adapter content pct 0.03 measured ×0.4 100%

duplication rate pct 22.74 measured ×0.4 100%

QC cost 1.6 min compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0