SRR5012866

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

33/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

bulk-RNA-seq

Organism

Sus scrofa

Instrument

PacBio RS II

Platform

PACBIO_SMRT

Read type

long-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 1649887021 reported

total reads 414021 reported

n content pct 0 measured

pct q20 bases 70.4 measured

pct q30 bases 65 measured

gc content pct 44.7 measured

mean read length 2857.1 measured

mean base quality 27.9 measured

adapter content pct 0.01 measured

duplication rate pct 16.16 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 33/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 65 measured ×1 0%

mean base quality 27.9 measured ×0.6 0%

adapter content pct 0.01 measured ×0.4 100%

duplication rate pct 16.16 measured ×0.4 100%

QC cost 28 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0