SRR5012867

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

33/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

bulk-RNA-seq

Organism

Sus scrofa

Instrument

PacBio RS II

Platform

PACBIO_SMRT

Read type

long-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 3308170003 reported

total reads 1182040 reported

n content pct 0 measured

pct q20 bases 13.3 measured

pct q30 bases 11.9 measured

gc content pct 46.4 measured

mean read length 2030.7 measured

mean base quality 11.9 measured

adapter content pct 0.01 measured

duplication rate pct 11.91 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 33/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 11.9 measured ×1 0%

mean base quality 11.9 measured ×0.6 0%

adapter content pct 0.01 measured ×0.4 100%

duplication rate pct 11.91 measured ×0.4 100%

QC cost 23 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0