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SRR5034722
SRAProvenance — who produced it, who reused it
Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
No linked papers found in the corpus yet.
Deep data QC
85/100 · BStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
Poecilia reticulata
Instrument
Illumina HiSeq 4000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
gc sd
9.91
measured
checksum ok
yes
reported
total bases
28760126600
reported
total reads
143800633
reported
n content pct
0.001
measured
pct q20 bases
96.6
measured
pct q30 bases
92.1
measured
pct reads q30
95
measured
sampled bases
90711600
measured
sampled reads
907116
measured
gc content pct
40
measured
polyg tail pct
0.01
measured
read length sd
0
measured
quality dropoff
-3.4
measured
read length max
100
measured
read length min
100
measured
read length n50
100
measured
max base quality
41
measured
mean read length
100
measured
max n pct per pos
0.028
measured
mean base quality
38.2
measured
pct reads lt 100bp
0
measured
read length median
100
measured
adapter content pct
0.09
measured
median read quality
39.9
measured
duplication rate pct
25.81
measured
overrepresented top pct
0.02
measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 85/100
The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
92.1
measured
×1
100%
duplication rate pct
25.81
measured
×0.5
44%
adapter content pct
0.09
measured
×0.4
100%
QC cost
22 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0