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SRR5045546
SRAProvenance — who produced it, who reused it
Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
No linked papers found in the corpus yet.
Deep data QC
100/100 · AStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
bulk-RNA-seq
Organism
Rosa chinensis
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
gc sd
7.46
measured
checksum ok
yes
reported
total bases
5791272450
reported
total reads
38608483
reported
n content pct
0
measured
pct q20 bases
96.8
measured
pct q30 bases
92.2
measured
pct reads q30
95.7
measured
sampled bases
87706200
measured
sampled reads
584708
measured
gc content pct
45.1
measured
polyg tail pct
0
measured
read length sd
0
measured
quality dropoff
-1.4
measured
read length max
150
measured
read length min
150
measured
read length n50
150
measured
max base quality
42
measured
mean read length
150
measured
max n pct per pos
0.022
measured
mean base quality
38.7
measured
pct reads lt 100bp
0
measured
read length median
150
measured
adapter content pct
0
measured
median read quality
40.3
measured
duplication rate pct
20.12
measured
overrepresented top pct
0.02
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100
The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
92.2
measured
×1
100%
mean base quality
38.7
measured
×0.6
100%
adapter content pct
0
measured
×0.4
100%
duplication rate pct
20.12
measured
×0.4
100%
QC cost
49 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0