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SRR5045551
SRAProvenance — who produced it, who reused it
Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
No linked papers found in the corpus yet.
Deep data QC
100/100 · AStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
bulk-RNA-seq
Organism
Rosa chinensis
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
gc sd
7.88
measured
checksum ok
yes
reported
total bases
5084488500
reported
total reads
33896590
reported
n content pct
0
measured
pct q20 bases
95.7
measured
pct q30 bases
90.1
measured
pct reads q30
93.2
measured
sampled bases
87124650
measured
sampled reads
580831
measured
gc content pct
45.5
measured
polyg tail pct
0
measured
read length sd
0
measured
quality dropoff
-4.3
measured
read length max
150
measured
read length min
150
measured
read length n50
150
measured
max base quality
42
measured
mean read length
150
measured
max n pct per pos
0.003
measured
mean base quality
38.1
measured
pct reads lt 100bp
0
measured
read length median
150
measured
adapter content pct
0.03
measured
median read quality
39.8
measured
duplication rate pct
20.61
measured
overrepresented top pct
0.02
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100
The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
90.1
measured
×1
100%
mean base quality
38.1
measured
×0.6
100%
adapter content pct
0.03
measured
×0.4
100%
duplication rate pct
20.61
measured
×0.4
100%
QC cost
16 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0