Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRR5059367

ENA first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

miRNA-Seq (Illumina HiSeq 1000, Mus musculus), grade B. Excellent base quality—pct_q30_bases=95.2 and mean_base_quality=36.8—compensate for extreme duplication (96.97%) typical of small RNA capture, enabling reliable miRNA expression analysis. Evidence strength is low; reading is provisional.

Data type / assay
bulk-RNA-seq
Organism
Mus musculus
Instrument
Illumina HiSeq 1000
Platform
ILLUMINA
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 857403653 reported
total reads 38540129 reported
n content pct 0 measured
pct q20 bases 97.9 measured
pct q30 bases 95.2 measured
gc content pct 39.3 measured
mean read length 22.2 measured
mean base quality 36.8 measured
adapter content pct 0 measured
duplication rate pct 96.97 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.2 measured ×1 100%
mean base quality 36.8 measured ×0.6 100%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 96.97 measured ×0.4 0%
QC cost 15 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0

Scientific quality

Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.

1 studies use it 1 reproduced mean score 89