SRR5082445

SRA first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

86/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

MiSeq WGS of Klebsiella pneumoniae (1.9M reads, 1 billion bases, 57.2% GC, 85% ≥Q30) with good base quality enables genomic characterization and resistance profiling. The dataset detects antimicrobial resistance genes and virulence factors.

Data type / assay

WGS

Organism

Klebsiella pneumoniae

Instrument

Illumina MiSeq

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 1021537148 reported

total reads 1851642 reported

n content pct 0.005 measured

pct q20 bases 93.4 measured

pct q30 bases 85 measured

gc content pct 57.2 measured

mean read length 273 measured

mean base quality 34.5 measured

adapter content pct 0 measured

duplication rate pct 8.59 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 86/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 85 measured ×1 75%

duplication rate pct 8.59 measured ×0.5 98%

adapter content pct 0 measured ×0.4 100%

QC cost 12 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0