SRR5082469

SRA first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

84/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Klebsiella pneumoniae WGS with B-grade quality limited by Q30 at 84.1% (scored 70/100), at the lower threshold for confident SNP detection. The longer reads (280.9 bp on MiSeq) and very low duplication (5.36%) are positive factors, but borderline Q30 introduces some false-call risk.

Data type / assay

WGS

Organism

Klebsiella pneumoniae

Instrument

Illumina MiSeq

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 972063985 reported

total reads 1718198 reported

n content pct 0.005 measured

pct q20 bases 93 measured

pct q30 bases 84.1 measured

gc content pct 56.8 measured

mean read length 280.9 measured

mean base quality 34.3 measured

adapter content pct 0 measured

duplication rate pct 5.36 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 84/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 84.1 measured ×1 71%

duplication rate pct 5.36 measured ×0.5 100%

adapter content pct 0 measured ×0.4 100%

QC cost 37 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0