SRR5109832

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

88/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Apis mellifera bulk-RNA-seq with B-grade quality: moderate duplication (58.92%) and slightly elevated adapter content (3.44%) indicate minor library-prep issues that limit the score. However, strong base quality (Q30=94.6%, mean 35.6) preserves utility for expression work with standard filtering.

Data type / assay

bulk-RNA-seq

Organism

Apis mellifera

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 8946224600 reported

total reads 44731123 reported

n content pct 0.002 measured

pct q20 bases 97.2 measured

pct q30 bases 94.6 measured

gc content pct 43.7 measured

mean read length 100 measured

mean base quality 35.6 measured

adapter content pct 3.44 measured

duplication rate pct 58.92 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 88/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94.6 measured ×1 100%

mean base quality 35.6 measured ×0.6 100%

adapter content pct 3.44 measured ×0.4 92%

duplication rate pct 58.92 measured ×0.4 36%

QC cost 32 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0