SRR5180232

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

HiSeq 2500 RNA-seq of Bombyx mori (24.3M reads, 7.3 billion bases, 44.9% GC, 94.6% ≥Q30) characterizes gene expression in the silk moth. The dataset supports studies of metamorphosis and immune responses.

Data type / assay

bulk-RNA-seq

Organism

Bombyx mori

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 7294712700 reported

total reads 24315709 reported

n content pct 0 measured

pct q20 bases 98 measured

pct q30 bases 94.6 measured

gc content pct 44.9 measured

mean read length 150 measured

mean base quality 39.7 measured

adapter content pct 0 measured

duplication rate pct 28.26 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94.6 measured ×1 100%

mean base quality 39.7 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 28.26 measured ×0.4 100%

QC cost 19 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0