SRR5193994

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

93/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

HiSeq 2500 RNA-seq from Lasius niger (21.6M reads, 4.4 billion bases, 36.5% GC, 92.2% ≥Q30) characterizes gene expression in this model ant species. The dataset supports studies of developmental transitions and social organization genetics.

Data type / assay

bulk-RNA-seq

Organism

Lasius niger

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 4361831854 reported

total reads 21593227 reported

n content pct 0.015 measured

pct q20 bases 95.1 measured

pct q30 bases 92.2 measured

gc content pct 36.5 measured

mean read length 101 measured

mean base quality 34.9 measured

adapter content pct 0.91 measured

duplication rate pct 47.69 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 93/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 92.2 measured ×1 100%

mean base quality 34.9 measured ×0.6 100%

adapter content pct 0.91 measured ×0.4 100%

duplication rate pct 47.69 measured ×0.4 61%

QC cost 42 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0