SRR520427

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

79/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Genome Analyzer II RNA-seq from Anopheles gambiae (32.5M reads, 5.5 billion bases, 44.5% GC, 100% ≥Q30) with perfect base quality from an early platform provides clean transcriptome coverage. The high-quality data supports vector-parasite interaction studies.

Data type / assay

bulk-RNA-seq

Organism

Anopheles gambiae

Instrument

Illumina Genome Analyzer II

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 5516533830 reported

total reads 32450199 reported

n content pct 0.014 measured

pct q20 bases 100 measured

pct q30 bases 100 measured

gc content pct 44.5 measured

mean read length 85 measured

mean base quality 30 measured

adapter content pct 0.52 measured

duplication rate pct 40.65 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 79/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 100 measured ×1 100%

mean base quality 30 measured ×0.6 33%

adapter content pct 0.52 measured ×0.4 100%

duplication rate pct 40.65 measured ×0.4 76%

QC cost 32 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0