Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRR5241767

ENA first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:opus

This is a high-depth bulk small-RNA library (annotated miRNA-Seq on MiSeq) whose base-level quality is genuinely strong: 96.6% Q30, mean base quality 36.1, zero adapter contamination, and negligible N-content all indicate clean, well-trimmed reads suitable for confident alignment. The B grade (83/100) is driven down almost entirely by a 96.97% duplication rate, which scored 0 and shaved points despite its partial weight—though for a short-fragment miRNA library this extreme duplication is expected, since the small pool of mature microRNA sequences is sampled repeatedly, so it reflects library biology more than a true defect and should not be over-penalized for small-RNA reuse. The flip side is that the ~36 bp read length and modest depth (7.1M reads) make this appropriate for miRNA quantification but ill-suited to repurposing as general mRNA/transcript-level RNA-seq. Note that the quality, GC, duplication, and adapter metrics are measured but the read and base counts are only reported (evidence_strength=1), so totals/depth should be treated as provisional pending a fully measured pass.

Data type / assay
bulk-RNA-seq
Organism
Mus musculus
Instrument
Illumina MiSeq
Platform
ILLUMINA
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 256204188 reported
total reads 7116783 reported
n content pct 0.001 measured
pct q20 bases 97.6 measured
pct q30 bases 96.6 measured
gc content pct 49.8 measured
mean read length 36 measured
mean base quality 36.1 measured
adapter content pct 0 measured
duplication rate pct 96.97 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.6 measured ×1 100%
mean base quality 36.1 measured ×0.6 100%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 96.97 measured ×0.4 0%
QC cost 12 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0

Scientific quality

Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.

1 studies use it 1 reproduced mean score 89