SRR5248266

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

99/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Short-read bulk RNA-seq from Spodoptera litura. Exceptional QC (A/99) with perfect Q30 (100%) and remarkably high mean base quality (71.1), with duplication at 33.34% the only minor constraint. This represents outstanding sequencing quality across the board, suitable for demanding downstream analyses.

Data type / assay

bulk-RNA-seq

Organism

Spodoptera litura

Instrument

Illumina HiSeq 4000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 6562413600 reported

total reads 32812068 reported

n content pct 0.008 measured

pct q20 bases 100 measured

pct q30 bases 100 measured

gc content pct 48.3 measured

mean read length 100 measured

mean base quality 71.1 measured

adapter content pct 0 measured

duplication rate pct 33.34 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 99/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 100 measured ×1 100%

mean base quality 71.1 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 33.34 measured ×0.4 93%

QC cost 12 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0