Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
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SRR5251236

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Illumina Genome Analyzer IIx miRNA-Seq of Aedes albopictus (Asian tiger mosquito) with 13.7 million reads and exceptional Q30 97% (Q20 99.4%) provides high-quality small-RNA profiling (18–30 nt) for this disease vector, enabling discovery of microRNAs and other regulatory RNAs. The 45.5% GC and superior data quality support sensitive miRNA quantification and identification of virus-regulated miRNAs relevant to dengue, Zika, and other arboviruses.

Data type / assay
bulk-RNA-seq
Organism
Aedes albopictus
Instrument
Illumina Genome Analyzer IIx
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 346108574 reported
total reads 13699029 reported
n content pct 0.006 measured
pct q20 bases 99.4 measured
pct q30 bases 97 measured
gc content pct 45.5 measured
mean read length 25.3 measured
mean base quality 38.3 measured
adapter content pct 0 measured
duplication rate pct 88.82 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 97 measured ×1 100%
mean base quality 38.3 measured ×0.6 100%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 88.82 measured ×0.4 0%
QC cost 55 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0