SRR5275317

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

49/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

bulk-RNA-seq

Organism

Sus scrofa

Instrument

PacBio RS II

Platform

PACBIO_SMRT

Read type

long-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 949969793 reported

total reads 410420 reported

n content pct 0 measured

pct q20 bases 77.5 measured

pct q30 bases 73.1 measured

gc content pct 49.3 measured

mean read length 2419.1 measured

mean base quality 30.6 measured

adapter content pct 0 measured

duplication rate pct 33.41 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 49/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 73.1 measured ×1 16%

mean base quality 30.6 measured ×0.6 43%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 33.41 measured ×0.4 92%

QC cost 28 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0