Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
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SRR5289599

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

HiSeq 1000 short-read RNA-seq of Spodoptera litura (Asian armyworm) with 3.4 million reads and exceptional Q30 96.7% (Q20 99%) provides small-scale but ultra-high-quality transcriptomics data for this agricultural pest. The 35.8% GC and minimal quality-score variance enable accurate differential expression in tissue, treatment, or instar-specific samples, making this ideal for validation studies.

Data type / assay
bulk-RNA-seq
Organism
Spodoptera litura
Instrument
Illumina HiSeq 1000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 591790894 reported
total reads 3394289 reported
n content pct 0.001 measured
pct q20 bases 99 measured
pct q30 bases 96.7 measured
gc content pct 35.8 measured
mean read length 84 measured
mean base quality 38.1 measured
adapter content pct 0 measured
duplication rate pct 76.09 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.7 measured ×1 100%
mean base quality 38.1 measured ×0.6 100%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 76.09 measured ×0.4 0%
QC cost 29 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0