Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
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SRR5313184

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

HiSeq 2000 short-read RNA-seq of Anopheles sinensis (malaria vector mosquito) with 25.5 million reads and high Q30 94.9% (Q20 98.2%) provides excellent quality for vector transcriptomics and blood-feeding-response profiling in this Asian malaria vector. The 51.7% GC and deep read coverage enable detection of vector-competence genes and pathogen-interaction pathways relevant to disease transmission dynamics.

Data type / assay
bulk-RNA-seq
Organism
Anopheles sinensis
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 7666260000 reported
total reads 25554200 reported
n content pct 0.009 measured
pct q20 bases 98.2 measured
pct q30 bases 94.9 measured
gc content pct 51.7 measured
mean read length 150 measured
mean base quality 39.1 measured
adapter content pct 1.13 measured
duplication rate pct 24.48 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94.9 measured ×1 100%
mean base quality 39.1 measured ×0.6 100%
adapter content pct 1.13 measured ×0.4 100%
duplication rate pct 24.48 measured ×0.4 100%
QC cost 56 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0