SRR5385399

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

82/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Klebsiella pneumoniae

Instrument

NextSeq 500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

gc sd 9.18 measured

checksum ok yes reported

total bases 955761402 reported

total reads 3837885 reported

n content pct 0 measured

pct q20 bases 88.9 measured

pct q30 bases 85.6 measured

pct reads q30 86.4 measured

sampled bases 262606 measured

sampled reads 1927 measured

gc content pct 53 measured

polyg tail pct 0 measured

read length sd 28.2 measured

quality dropoff 1.7 measured

read length max 150 measured

read length min 36 measured

read length n50 149 measured

max base quality 36 measured

mean read length 136.3 measured

max n pct per pos 0 measured

mean base quality 32.5 measured

pct reads lt 100bp 12.4 measured

read length median 149 measured

adapter content pct 0 measured

median read quality 32.7 measured

duplication rate pct 16.04 measured

overrepresented top pct 0.31 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 82/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 85.6 measured ×1 78%

duplication rate pct 16.04 measured ×0.5 75%

adapter content pct 0 measured ×0.4 100%

QC cost 1 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0