SRR5385402

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

76/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Klebsiella pneumoniae

Instrument

NextSeq 500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

gc sd 11.43 measured

checksum ok yes reported

total bases 225023510 reported

total reads 916773 reported

n content pct 0 measured

pct q20 bases 86.9 measured

pct q30 bases 80.7 measured

pct reads q30 76.9 measured

sampled bases 4852562 measured

sampled reads 50932 measured

gc content pct 43.4 measured

polyg tail pct 0.3 measured

read length sd 40.5 measured

quality dropoff 1 measured

read length max 150 measured

read length min 36 measured

read length n50 123 measured

max base quality 36 measured

mean read length 95.3 measured

max n pct per pos 0.004 measured

mean base quality 31.7 measured

pct reads lt 100bp 55.71 measured

read length median 90 measured

adapter content pct 0.01 measured

median read quality 32 measured

duplication rate pct 5.81 measured

overrepresented top pct 0.05 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 76/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 80.7 measured ×1 54%

duplication rate pct 5.81 measured ×0.5 100%

adapter content pct 0.01 measured ×0.4 100%

QC cost 2 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0