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SRR5385407
SRAProvenance — who produced it, who reused it
Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
No linked papers found in the corpus yet.
Deep data QC
67/100 · DStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
Klebsiella pneumoniae
Instrument
NextSeq 500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
gc sd
6.06
measured
checksum ok
yes
reported
total bases
249653791
reported
total reads
968513
reported
n content pct
0
measured
pct q20 bases
84.7
measured
pct q30 bases
77.4
measured
pct reads q30
80
measured
sampled bases
464
measured
sampled reads
5
measured
gc content pct
49.8
measured
polyg tail pct
0
measured
read length sd
46.4
measured
quality dropoff
0.9
measured
read length max
149
measured
read length min
39
measured
read length n50
148
measured
max base quality
36
measured
mean read length
92.8
measured
max n pct per pos
0
measured
mean base quality
31.2
measured
pct reads lt 100bp
60
measured
read length median
66
measured
adapter content pct
0
measured
median read quality
31.5
measured
duplication rate pct
0
measured
overrepresented top pct
20
measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 67/100
The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
77.4
measured
×1
37%
duplication rate pct
0
measured
×0.5
100%
adapter content pct
0
measured
×0.4
100%
QC cost
1 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0