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SRR5385408
SRAProvenance — who produced it, who reused it
Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
No linked papers found in the corpus yet.
Deep data QC
93/100 · AStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
Klebsiella pneumoniae
Instrument
NextSeq 500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
gc sd
22.56
measured
checksum ok
yes
reported
total bases
903530243
reported
total reads
3518388
reported
n content pct
0
measured
pct q20 bases
93.1
measured
pct q30 bases
92.6
measured
pct reads q30
100
measured
sampled bases
612
measured
sampled reads
6
measured
gc content pct
83.7
measured
polyg tail pct
50
measured
read length sd
48.3
measured
quality dropoff
-1.7
measured
read length max
150
measured
read length min
46
measured
read length n50
150
measured
max base quality
36
measured
mean read length
102
measured
max n pct per pos
0
measured
mean base quality
34.1
measured
pct reads lt 100bp
50
measured
read length median
107.5
measured
adapter content pct
0
measured
median read quality
33.2
measured
duplication rate pct
16.67
measured
overrepresented top pct
33.33
measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 93/100
The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
92.6
measured
×1
100%
duplication rate pct
16.67
measured
×0.5
73%
adapter content pct
0
measured
×0.4
100%
QC cost
1 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0