SRR5385419

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

78/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Klebsiella pneumoniae

Instrument

NextSeq 500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

gc sd 8.54 measured

checksum ok yes reported

total bases 1278775079 reported

total reads 5589191 reported

n content pct 0 measured

pct q20 bases 94.8 measured

pct q30 bases 87.8 measured

pct reads q30 94.8 measured

sampled bases 81055580 measured

sampled reads 703682 measured

gc content pct 56.2 measured

polyg tail pct 0.01 measured

read length sd 37.8 measured

quality dropoff 2.3 measured

read length max 150 measured

read length min 36 measured

read length n50 149 measured

max base quality 37 measured

mean read length 115.2 measured

max n pct per pos 0.009 measured

mean base quality 34.3 measured

pct reads lt 100bp 34.97 measured

read length median 129 measured

adapter content pct 0 measured

median read quality 34.9 measured

duplication rate pct 28.14 measured

overrepresented top pct 0.09 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 78/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 87.8 measured ×1 89%

duplication rate pct 28.14 measured ×0.5 37%

adapter content pct 0 measured ×0.4 100%

QC cost 13 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0