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SRR5385422
SRAProvenance — who produced it, who reused it
Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
No linked papers found in the corpus yet.
Deep data QC
48/100 · FStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
Klebsiella pneumoniae
Instrument
NextSeq 500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
gc sd
11.52
measured
checksum ok
yes
reported
total bases
487693919
reported
total reads
1732104
reported
n content pct
0
measured
pct q20 bases
82.5
measured
pct q30 bases
70.2
measured
pct reads q30
35.8
measured
sampled bases
5030
measured
sampled reads
53
measured
gc content pct
54.5
measured
polyg tail pct
0
measured
read length sd
42.5
measured
quality dropoff
0.1
measured
read length max
150
measured
read length min
37
measured
read length n50
124
measured
max base quality
37
measured
mean read length
94.9
measured
max n pct per pos
0
measured
mean base quality
30.4
measured
pct reads lt 100bp
54.72
measured
read length median
88
measured
adapter content pct
0
measured
median read quality
28.6
measured
duplication rate pct
0
measured
overrepresented top pct
1.89
measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 48/100
The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
70.2
measured
×1
1%
duplication rate pct
0
measured
×0.5
100%
adapter content pct
0
measured
×0.4
100%
QC cost
1 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0