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SRR5385428
SRAProvenance — who produced it, who reused it
Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
No linked papers found in the corpus yet.
Deep data QC
76/100 · CStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
Klebsiella pneumoniae
Instrument
NextSeq 500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
gc sd
11.1
measured
checksum ok
yes
reported
total bases
1558842879
reported
total reads
6126015
reported
n content pct
0
measured
pct q20 bases
94.7
measured
pct q30 bases
87
measured
pct reads q30
94.3
measured
sampled bases
81393948
measured
sampled reads
636280
measured
gc content pct
53.7
measured
polyg tail pct
0.01
measured
read length sd
32
measured
quality dropoff
2.5
measured
read length max
150
measured
read length min
36
measured
read length n50
150
measured
max base quality
37
measured
mean read length
127.9
measured
max n pct per pos
0.006
measured
mean base quality
34.2
measured
pct reads lt 100bp
20.17
measured
read length median
149
measured
adapter content pct
0
measured
median read quality
34.8
measured
duplication rate pct
27.09
measured
overrepresented top pct
0.19
measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 76/100
The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
87
measured
×1
85%
duplication rate pct
27.09
measured
×0.5
40%
adapter content pct
0
measured
×0.4
100%
QC cost
16 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0