SRR5385432

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

92/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Klebsiella pneumoniae

Instrument

NextSeq 500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

gc sd 9.41 measured

checksum ok yes reported

total bases 135530083 reported

total reads 1299148 reported

n content pct 0 measured

pct q20 bases 92.7 measured

pct q30 bases 89.1 measured

pct reads q30 89.1 measured

sampled bases 52544691 measured

sampled reads 729679 measured

gc content pct 56.8 measured

polyg tail pct 0.04 measured

read length sd 7.4 measured

quality dropoff 1.3 measured

read length max 91 measured

read length min 36 measured

read length n50 74 measured

max base quality 36 measured

mean read length 72 measured

max n pct per pos 0 measured

mean base quality 33.4 measured

pct reads lt 100bp 100 measured

read length median 74 measured

adapter content pct 0 measured

median read quality 34.1 measured

duplication rate pct 14.35 measured

overrepresented top pct 0.03 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 92/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 89.1 measured ×1 96%

duplication rate pct 14.35 measured ×0.5 80%

adapter content pct 0 measured ×0.4 100%

QC cost 14 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0