SRR5406996

ENA first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

96/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Short-read amplicon sequencing from Bos taurus. Strong QC (A/96) with good Q30 (88.9%) and zero adapter contamination; however, the coverage metric (0.3×) is extrapolated and a deep measured validation is pending. While duplication is very high (96.27%), this is expected in amplicon workflows.

Data type / assay

amplicon

Organism

Bos taurus

Instrument

Illumina MiSeq

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 18623841 reported

total reads 42227 reported

n content pct 0 measured

pct q20 bases 96.7 measured

pct q30 bases 88.9 measured

gc content pct 53.1 measured

mean read length 441 measured

mean base quality 35.3 measured

adapter content pct 0 measured

duplication rate pct 96.27 measured

mean target coverage 0.3 extrapolated

How this grade was computed

Weighted mean of 2 scored metric(s) → 96/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 88.9 measured ×1 95%

adapter content pct 0 measured ×0.5 100%

QC cost 3 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0