SRR5482173

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Colletotrichum higginsianum IMI 349063

Instrument

Illumina HiSeq 1500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

gc sd 10.44 measured

checksum ok yes reported

total bases 198595089 reported

total reads 2006011 reported

n content pct 0.01 measured

pct q20 bases 97.5 measured

pct q30 bases 94.1 measured

pct reads q30 95.1 measured

sampled bases 65584728 measured

sampled reads 662472 measured

gc content pct 52.8 measured

polyg tail pct 0.04 measured

read length sd 0 measured

quality dropoff -4.8 measured

read length max 99 measured

read length min 99 measured

read length n50 99 measured

max base quality 41 measured

mean read length 99 measured

max n pct per pos 0.213 measured

mean base quality 36.1 measured

pct reads lt 100bp 100 measured

read length median 99 measured

adapter content pct 0.13 measured

median read quality 37 measured

duplication rate pct 2.62 measured

overrepresented top pct 0.02 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94.1 measured ×1 100%

duplication rate pct 2.62 measured ×0.5 100%

adapter content pct 0.13 measured ×0.4 100%

QC cost 25 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0