Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRR5534476

SRA first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

99/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Illumina HiSeq 2500 whole-genome sequencing (WGS) of Homo sapiens with 196.5 million reads, 98.2 Gb bases, and 31.7× mean coverage provides high-quality human genomic data suitable for variant calling, copy-number detection, and structural-variant discovery. The 92.6% Q20 and 89.4% Q30 base quality support sensitive SNP/indel genotyping and medium-resolution genome analysis, though not sufficient for ultra-rare variant or base-modification detection.

Data type / assay
WGS
Organism
Homo sapiens
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 98244942000 reported
total reads 196489884 reported
mean coverage 31.7 extrapolated
n content pct 0.017 measured
pct q20 bases 92.6 measured
pct q30 bases 89.4 measured
gc content pct 40.4 measured
mean read length 250 measured
mean base quality 35.6 measured
adapter content pct 1.46 measured
duplication rate pct 0.48 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 99/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 31.7 extrapolated ×1.2 100%
pct q30 bases 89.4 measured ×1 97%
duplication rate pct 0.48 measured ×0.5 100%
adapter content pct 1.46 measured ×0.4 97%
QC cost 18 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0