Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRR5602469

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Bombyx mori (silkworm) bulk RNA-Seq dataset from the Illumina HiSeq 1000 platform contains 13.9 million short reads (2.80 billion bases) with excellent quality (97.3% Q20, 91.3% Q30 bytes). The high-quality reads enable robust expression profiling of this model lepidopteran and economically important insect. Search terms: lepidopteran transcriptomics, HiSeq 1000, silkworm biology, insect development, sericulture genomics.

Data type / assay
bulk-RNA-seq
Organism
Bombyx mori
Instrument
Illumina HiSeq 1000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 2804598300 reported
total reads 13884150 reported
n content pct 0.004 measured
pct q20 bases 97.3 measured
pct q30 bases 91.3 measured
gc content pct 43.7 measured
mean read length 101 measured
mean base quality 35.5 measured
adapter content pct 0.13 measured
duplication rate pct 25.54 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 91.3 measured ×1 100%
mean base quality 35.5 measured ×0.6 100%
adapter content pct 0.13 measured ×0.4 100%
duplication rate pct 25.54 measured ×0.4 100%
QC cost 53 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0